@algora-pbc /claim #10

Summary

Implements a self-contained Scientific Repository Versioning milestone for issue #10.

This adds deterministic project repository and version-control workflows:

• repository component manifest for manuscript, data, code, notebooks, results, protocols, and metadata
• hash-based integrity tracking
• commits, branches, semantic tags, and rollback metadata
• fork attribution records
• merge request review/check/mergeability state
• editor and diff mode mapping for Markdown, LaTeX, CSV, JSON, Jupyter, code, and LFS/binary assets
• computation-aware reproducibility checks
• DOI, APA, and BibTeX citation generation
• export metadata and cite badge payload
• lightweight local API/demo server

Requirement Mapping

• Repository structure and components: buildRepositoryManifest
• File and metadata versioning: createCommit, createTag, buildVersionGraph
• Git-compatible concepts: commit parents, branch refs, tags, LFS markers
• Hash integrity: hashContent
• Forking: createForkRecord
• Merge requests: buildMergeRequest
• Editors and diffs: buildEditorCapabilities, buildDiffPlan
• Reproducibility pipeline: buildReproducibilityReport
• DOI/citation: buildCitationRecord
• Export metadata: buildRepositoryExport

Full mapping is in scientific-repository-versioning/docs/requirement-map.md.

Verification

cd scientific-repository-versioning
npm run check
npm test
PORT=4329 npm start

API smoke tested locally:

• /api/manifest
• /api/versioning
• /api/fork
• /api/merge-request
• /api/diff
• /api/reproducibility
• /api/citation
• /api/export

Notes

Prepared with OpenAI Codex assistance. The implementation and tests were reviewed and run locally before submission.